Protein Info for ABZR88_RS05340 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: B12-binding domain-containing radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 PF02310: B12-binding" amino acids 30 to 125 (96 residues), 46.2 bits, see alignment E=6.1e-16 PF04055: Radical_SAM" amino acids 170 to 339 (170 residues), 73.1 bits, see alignment E=4.7e-24 PF13282: DUF4070" amino acids 358 to 495 (138 residues), 68.5 bits, see alignment E=9.8e-23

Best Hits

KEGG orthology group: None (inferred from 46% identity to cte:CT1903)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (518 amino acids)

>ABZR88_RS05340 B12-binding domain-containing radical SAM protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKILLVYPEMYDSFYAFKHLASLIGKKAAFPPLGLLTVAAMLPQNWERKLIDLNVKALSD
SDIEWADMVFVSAMNVQEESVRKIIAQCKRKNATIVAGGPLFTHEHERFEGIDHFVLNEA
EITLPLFLADLESGRAKPIYKTAEFADVSKTPLPQMDLINMKDYLYAIVQFSRGCPYLCD
FCDVTTLYGRKPRTKSAEQIIAELELIHKAGESQNVLFADDNLIGNKKILKSELLPALID
WQYKTNPGLYFITQLTINLADDDEMMRLMLEAKFRNVFIGIETPDEDSLKLSLKNQNLKR
DILSNIHRLHQAGFTIMGGFIVGFDTDKDNSFKNIIDFIQESGIPIPIVNVLKAPPGTAL
FDRMKRENRLSRHFTFSEGETNIIPVMGAERLKNGFLQVVSSIYPAEHSYKRVKRFLTMH
EFPKNGGVKTKEKYTFSQLYHIIKAIIKLAVFDKDGKHYRDLLLWTYKNKRTHLSLALMY
GMMLYQLRENHKQIVTTLSRSADVYEPDSKPMLLAEAV