Protein Info for ABZR88_RS04775 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 709 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF00515: TPR_1" amino acids 55 to 87 (33 residues), 35.5 bits, see alignment (E = 4.6e-12) PF13181: TPR_8" amino acids 55 to 87 (33 residues), 24.5 bits, see alignment (E = 1.5e-08) amino acids 122 to 155 (34 residues), 17.1 bits, see alignment (E = 3.7e-06) amino acids 233 to 255 (23 residues), 15.8 bits, see alignment (E = 9.7e-06) amino acids 304 to 325 (22 residues), 15.5 bits, see alignment (E = 1.2e-05) amino acids 531 to 563 (33 residues), 12.8 bits, see alignment (E = 8.5e-05) amino acids 565 to 591 (27 residues), 15.4 bits, see alignment (E = 1.2e-05) PF07719: TPR_2" amino acids 55 to 87 (33 residues), 28.3 bits, see alignment (E = 9.2e-10) PF13432: TPR_16" amino acids 60 to 112 (53 residues), 25.6 bits, see alignment 1.1e-08 amino acids 129 to 189 (61 residues), 39.8 bits, see alignment 3.9e-13 amino acids 197 to 256 (60 residues), 32.5 bits, see alignment 7.3e-11 amino acids 267 to 326 (60 residues), 16.9 bits, see alignment 5.9e-06 amino acids 332 to 393 (62 residues), 24.2 bits, see alignment 3e-08 amino acids 409 to 460 (52 residues), 18 bits, see alignment 2.7e-06 amino acids 536 to 591 (56 residues), 19.5 bits, see alignment 8.5e-07 PF13414: TPR_11" amino acids 134 to 170 (37 residues), 33.5 bits, see alignment 2e-11 amino acids 200 to 233 (34 residues), 30.6 bits, see alignment (E = 1.7e-10) amino acids 401 to 440 (40 residues), 29.3 bits, see alignment 4.2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (709 amino acids)

>ABZR88_RS04775 tetratricopeptide repeat protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKTILLVLFLLPFYALAQNSEALIQSGNAKAGEKNYTGAIADFSRAIQLDGNNSRIYYYR
ANAYSNLKDYRNAISDFTRSIELNPNYVMAWFYRGNAHAANHEPTDAIDDFDHAMAMNTP
TAEMYHYRANAKSDAGDYDGAIADFNTAIKMSPNNADLYEYRGVAKANQGNHQGAIADYD
VAARLQPNNSDLVFYRANSKASLGDFPGAIADYKRATTLNPRNADAFFYCANAEANLKQY
DAAIADFKTAISINPRLPNIYKYLANALSHGSNIGSAASYFTDALKRDPNNAEIYLYDGI
VKNNLGDQDAAMTDFNKSIKLNPKNADAYQTRADLRYDLKDYDGAKGDADTAIILDPKNS
YAYLSRARVLLKLKDTVKALADADQSIKINPTNDYGLVVRGDIRTIMKKYPDALADYDKA
LRINSGNAETYLKRGAARLMAGDRTGSLQDYNKALTMDKGNVSMYSRAGQEMLDAEFYAD
VLPVYDFLLSKKPTESGYYINRGIAKQHTGNEQGALTDFNHAIDMDAVSGKALAQRASLQ
LQLKNYDASLQDVNKALLINENDDEAYFIRGNLYLEKKDYRNALSDYNTALFINLKNDKV
VASRGYVESFLPDFKDRMNADFADAIKRQPNNARVYDLRGQAKFNTRDLTAAQDFDKAIA
LDARYAPAYLHRGLLKVSGANTSSACADFKKAFDLGMKEAQEQIRRYCK