Protein Info for ABZR88_RS04195 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: ATP synthase F1 subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 TIGR01146: ATP synthase F1, gamma subunit" amino acids 1 to 294 (294 residues), 314.6 bits, see alignment E=4.1e-98 PF00231: ATP-synt" amino acids 3 to 294 (292 residues), 340.1 bits, see alignment E=6.9e-106

Best Hits

Swiss-Prot: 59% identical to ATPG_CYTH3: ATP synthase gamma chain (atpG) from Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)

KEGG orthology group: K02115, F-type H+-transporting ATPase subunit gamma [EC: 3.6.3.14] (inferred from 79% identity to phe:Phep_0397)

Predicted SEED Role

"ATP synthase gamma chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>ABZR88_RS04195 ATP synthase F1 subunit gamma (Mucilaginibacter yixingensis YX-36 DSM 26809)
MANLKEVRNRISSINSTQQITKAMKMVSAAKLKRATNAIVQLRPYAEKLKELLGNLSASL
EEGSSPFLQEREPVRVLVVVVTSNRGLAGAFNTNAIKTANNLIAEKYSKQLAAGNVSIVA
IGKKAQEFYQRRNYNVIGNNNEVYTNLNFTTVSAVTEAIMEGFVNGKYDRVELVYNHFRN
AAVQILVAEQLLPVPKAEAKASVKNTAASQVDYILEPSKEEIVAELIPKNIKVQLYKAVL
DSHASEHGARMTAMDKATDNAGELLKALKLSYNQARQAAITTELTEIVSGAAALSNG