Protein Info for ABZR88_RS03490 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: 30S ribosomal protein S1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 643 PF00575: S1" amino acids 84 to 149 (66 residues), 25.5 bits, see alignment E=2.2e-09 amino acids 165 to 233 (69 residues), 40.5 bits, see alignment E=4.5e-14 amino acids 250 to 322 (73 residues), 70.6 bits, see alignment E=1.8e-23 amino acids 337 to 409 (73 residues), 59.8 bits, see alignment E=4.3e-20 amino acids 426 to 496 (71 residues), 54.7 bits, see alignment E=1.6e-18 amino acids 510 to 577 (68 residues), 38.9 bits, see alignment E=1.4e-13

Best Hits

KEGG orthology group: K02945, small subunit ribosomal protein S1 (inferred from 83% identity to shg:Sph21_3134)

Predicted SEED Role

"SSU ribosomal protein S1p" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (643 amino acids)

>ABZR88_RS03490 30S ribosomal protein S1 (Mucilaginibacter yixingensis YX-36 DSM 26809)
MSKKQEAENELKAKEAELGSADVATEDRIESEADSLSIEEIKSQIAQNNQDFDWDADDKK
FGNYSAAEREKMEQMYDVTFSSINQGEIIVGTVVNINNKDVVLNIGFKSDGMVSLSEFRD
MPELKIGDQVDVFVESQEDANGQLVLSRKRAKTQKSWERINQALENDEIITGFVKSRTKG
GLIVDIMGVEAFLPGSQIDIKPIRDYDVYVGKTMEFKVVKINHEFKNVVVSHKVLIEDDL
ENQKTEIVAKLEKGQVLEGTVKNITDFGVFIDLGGVDGLLHITDISWGRIEHPREVLALD
QKINVVVLDFDDEKKRIALGLKQLTPHPWQSLDEAIQVGSIVKGKIVTVADYGAFLEIIP
GVEGLIHVSEMSWSQNLRNPQEFLKVSDEIEAQVLTLDREERKMSLGIKQLTPDPWQNAG
DKYAIGTQHVATVKNMTNFGVFVELEDGIDGLVHISDLSWSKKINHPNEFTKVGEKLDVV
VLELDIENRKLSLGHKQLEENPWDTFETIFNVDSVHEGTVLKVTDKGAIVALPYGVEGFA
PTKHLVKEDGKALKADETAEFKIIEFNKDSKRIVISHSRIWEDLRNEARIQDFENRKKEA
KATTSAVKKVKDSVEKSTLGDLSVLAQLKEQMEGAEKKSKETK