Protein Info for ABZR88_RS03000 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: sterol desaturase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details amino acids 55 to 76 (22 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 63 to 200 (138 residues), 69.1 bits, see alignment E=2.6e-23

Best Hits

KEGG orthology group: None (inferred from 66% identity to cpi:Cpin_2405)

Predicted SEED Role

"Fatty acid hydroxylase-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>ABZR88_RS03000 sterol desaturase family protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKKNYVSNSTESVRMFKSDFLESLSKVHFTVPLYVYVPVILACCYMALFKTALGILNFAE
MLVAGLFIWSLTEYILHRFVFHYVPKAEWALRLHFIFHGVHHDYPSDAKRLVMPLSASIP
LATGFFFLFKSLLPVDHVWGFFAGFIIGYLVYDIGHYAIHHFNFKSGMWKKIKQHHMLHH
YQDPGKGYGVSSPFWDKIFRSDFIKK