Protein Info for ABZR88_RS02895 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: glycosyl hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 710 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF17132: Glyco_hydro_106" amino acids 162 to 681 (520 residues), 131.5 bits, see alignment E=2.1e-42

Best Hits

Predicted SEED Role

"Predicted alpha-L-rhamnosidase" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (710 amino acids)

>ABZR88_RS02895 glycosyl hydrolase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MRKPYKILLPMLCCAGSLWAQPKPQQWQMVTQPSYHEMLKGFATPPNQYAQTLTWGLEGP
IGRDNISRDLDEMYKQGIRAVSIEGGYGMPEPYLSPGYFENVKIIVEELKKRNMHLWIID
EGKYPSGFAGGLISQKSPELRMQGIVVSKRLRTEDNQPLSIDLPKQTLSAVAVNTSTQEN
KVLDISSGKLNWPATPGTWQITVVDHRFKTSVTRAANNPTHGKDTVNSLIDYLDPAATRK
FMEYTHEQYKKYIGAEFGKTVLGFRGDEPEYGFTPWTPELLKIFKEKKQYDITPYLASFF
IQQPTEEQKMAKADFFDVWSDLFRDNFFKVQADWCRANGLEYMVHIDREDMLMQLVRSEG
DYFKDMRYVQVPGVDAIWHQIWYDNVADFPKLASSAAHMYGRPRALSESFAAYRPAPTVA
DARWVVNEEMVRGINLFEYMFWSSSANRKEGAPASQRGYLHDTAFVKLSAYSNRASWLLA
NGIPAARVGLYCPTEAMWTGNKMADSTLRVIGKQLLEHQVDFDYVDNQGLASDFRLQKGS
FTNLSGQKYTAIIVPSANVLSADMIARLKTFATGGGKVIFAGEVPGKMTYPNFLHATDLP
KQPWVTYADWTNLTSDFFAQLPHDVILNKTAPGVKYLHREWKNADLYFFFNEGKEAQDLQ
VTLNGSGSVTFWDAETGTTQAANGANQKGNQTQLPLQLKGYETRFVIIQH