Protein Info for ABZR88_RS02075 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 PF08448: PAS_4" amino acids 3 to 88 (86 residues), 26.8 bits, see alignment E=7.7e-10 TIGR00229: PAS domain S-box protein" amino acids 96 to 215 (120 residues), 28.9 bits, see alignment E=5.3e-11 PF00512: HisKA" amino acids 221 to 288 (68 residues), 42.6 bits, see alignment E=7.4e-15 PF02518: HATPase_c" amino acids 332 to 441 (110 residues), 101 bits, see alignment E=8.4e-33

Best Hits

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (443 amino acids)

>ABZR88_RS02075 ATP-binding protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MWGRSEDEVLHLPILEAMPELKAQGIDELLNAVYHGGEKFYFTERPVDLRRGDHLETLYL
NFSYEPLYDADGVINGFITIGTDVTEQVNARLALARTEEMLRFSVDAAGAATWHMDIATR
SFVFSEGMKSLYGFRAEEEAGYDDLLARVPAPYQQTLKEQVEQTIADGSPYLNEHPVKMP
DDRERWVRAIGKRYPGEGKWGAHFSGLVIDITDEKLEDMRKSGFIGMASHELKTPLTSLS
AIIQVAGLKLKDSEDAFLKGAMERANNQVKRMTAMINGFLNISRLESGKLIIDKENFDLE
ALMRDIADEISLTATNHEIELDLCGYLGIRADRDKVGSVISNLLSNAVKYSPPGTTIRVK
CGIEGKYVQISVRDEGMGIDAIDIKRLFDRYYRVESSRTKHISGFGIGLYLCSEIIKQHG
GKIWAESTLGQGSTFYFTLPLIG