Protein Info for ABZR88_RS02065 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: DUF3098 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 89 transmembrane" amino acids 35 to 52 (18 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details PF11297: DUF3098" amino acids 30 to 86 (57 residues), 58.2 bits, see alignment E=2.5e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (89 amino acids)

>ABZR88_RS02065 DUF3098 domain-containing protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MALKTTPSSPIKRSGATAANPVQEPVNLLYDKGNYTWLGISVLVVAFGFVLMSGNTDIYS
TTKIVIAPILVLAGFGLGFYALLKKPATK