Protein Info for ABZR88_RS01130 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: glycosyl hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1097 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF17132: Glyco_hydro_106" amino acids 41 to 693 (653 residues), 489.7 bits, see alignment E=1.8e-150 amino acids 744 to 826 (83 residues), 29.8 bits, see alignment 2.4e-11 amino acids 825 to 895 (71 residues), 42.2 bits, see alignment 4.1e-15

Best Hits

Predicted SEED Role

"glycoside hydrolase family 2, sugar binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1097 amino acids)

>ABZR88_RS01130 glycosyl hydrolase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MMQKKIVLIAYVCLCCLTLRGSAQVRSGSPAKDDLKRVFEHPPESAKPWVFWYWMYGAVT
REGITADLQALKQNGIEGAFLMPIKAPGAQPMIPNPIVQLSPQWWDIIKYTMQEADRIGV
KLAMHDADGFALAGGPWITPEISMQKVVWSKKIIAGGKAFNDTLPTPAHYKNYYKDIEVL
AYPSLTGEGVSSYDFHPKVTTSLAGTEVQSLGERGNRKSVSTSDACWFQLEFEKPFTSRS
LIIHTSASNYQSERLEVQVSDDGQTFRSLGHLDPPRAGWQDGDSEITNDIPETTAKYYRF
VYDKAGSEPGAEDLDFAKWKPMLKFCGIELMAQPHIHQYESKTGEAWRVSKHTTAQQLPD
ALCIPKDKIINITDKLGADGRLNWTAPAGNWTIIRIGHTSTGHMNATGGGGIGLECDKFS
PEVATLQFNSWFGEAIKQAGPDLAKRVLKTLHIDSWECGSQNWSPIFAEEFKKRRGYDLM
PYMPLFAGVPVQSASESEKVLADVRETIAELLVDKFYATMAKLAHEKGCDFTAESVAPTM
VGDGMMHYKMADIPMGEFWYRSPTHDKPNDMADAISGGHIYGKNIIQAEAFTELRLMWDE
HPGTLKAMADYNFTLGINRYVFHVSVHNPWLDRKPGMTLDGIGNFFQRDQTWWKPGKAWF
EYITRCEALLQMGHPVTDIAVFSGEEIPRRAVLPNRLTTVLPGLVGEEAVKKEAARLANK
GEPQISMVEDATHSANMEIAGQMIDPLRGYAYDSFNKDALLNLMKAQNGRVVLPGGASYG
VLVIPGPTALDPNGKLSVASQNKINELEKGGVKVIYGQHPYQKATFDDWKISRDFIATEN
SQPAKGVAWIHRAGADFDLYFISNQQAEKRTLNLSLRATGRAVELWDAVTGEIATANGWK
VNASRTELPLALDANGSIFIILRKNAPATIAKAKTGEAKTVQTLGDKWQVKFNPAFGGPK
EEVTLNTTDDWSKQADAGIKNYSGTAIYSQSFNWKPSASKEIWIDFGKVNNLAEVYVNGV
NCGVAWTYPYRVNITKALKAGKNDLKVEVTNTWANRVKADHDLPQAQQVTWTNARYYLEN
RKPLPAGLTQVVKLVGR