Protein Info for ABZR88_RS00670 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: DUF2625 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 PF10946: DUF2625" amino acids 4 to 209 (206 residues), 287.3 bits, see alignment E=2.3e-90

Best Hits

Swiss-Prot: 43% identical to Y374_HAEIN: Uncharacterized protein HI_0374 (HI_0374) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 59% identity to fjo:Fjoh_4707)

Predicted SEED Role

"ABC-type sugar transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (224 amino acids)

>ABZR88_RS00670 DUF2625 domain-containing protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MRPLAELINIEDPAWPLVKGWIDSAKNKVQVLPRDTAKADDALLKTQVTTRSPMGAIVYE
TGGLLIDGGWIRILGSGSSGLNRSLPYWNKGKTIKEWGDVSPYWLIADDAVGGFFAINGG
GLGADAGKVYYLAPDTLEWESLGLSYSDFLMFCFSGNLQAFYKTIRWKSWQNDLIQLKSD
QAFSFYPYLWTSEGKDIEKDSRKPVPVEEIFTFTADSRKQMGIR