Protein Info for ABZR88_RS00315 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 940 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 28 to 100 (73 residues), 33.1 bits, see alignment 6.2e-12 PF14905: OMP_b-brl_3" amino acids 474 to 833 (360 residues), 35.2 bits, see alignment E=7.7e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (940 amino acids)

>ABZR88_RS00315 TonB-dependent receptor (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKKPLYLAIILFVLTAFAFKADAQHKGTVKAKIVDAKDVPIELATASVLAADSSLVRTTA
TDKNGMLNIEGLAFGHYRLMVSQLGLQHKIVPFTLSAEKPVVDLGKLQMEVAVHALNQVD
VVGEKAPVTIKGDTTEFNASSFKTQKNDNVEALIKKLPGVDVDKDGKITAQGQQVKKVLV
DGKEFFGNDPKAATRNLPADAVKSVQVIDDKTDKAKNTGIDDGQRQKVMNVTLKDDKKSG
WFGNITGASGNSDRYLGQFNLNHFDTKRQLSFLFLSNNVNESGFSFEDLNNFAGNGLFDM
FSGGGGGGITINMSSSGRVDINGAFSGVGGGLITSHSGGINYSDEFAKGKLKFNASTLSI
LTRNTVARTSDIQDLPNNLFTNQLSNGNNTSNSYRLNFSLEYKLDSLTTFRLKPVVSTTY
KKNYSSLTSGTVDQLADSVNSIRQLFDQSMHSPAIGGQFTFNRKLHNNAGSLNFFVDGNY
SANNSDYTNRSNTLFYQGTQPNSNLNQLASQDADVSYLNGTASFVRQLNRIKRISLTMSQ
GFNVQKQNATQNTLDYNPVTGNYEILNPLYSGLSDNHSHRYTSTVGLSKTNDKFTVNVNM
ALSELGLSGYSNANNAVNNVGREDWAFTPNASFSLRKNKSGRYAYISVGTDVSQPSATDL
QTVFTNTNPLYIRQGNPDLKMSRSFYVNGSFSRFNQKNNTYYNVNASYNTTYNGFSTASS
VNGGVTTSRPINVDGNYSMTVGASMGKPTQIKGLKFNTGIYTNMSRNINMINDNRNAVTR
FSPNVNAGLNFDRDKFQTSINTAVFYNNAKNSYQSAADRHYWSYNNRMSASVLPVKTLRI
FSDVTQSMYRGQPASANTTYYLWNAGIERYFLKGRNLTLSLNAFDLLDQNSGIQRSVTQL
GAIQNNQTNTLGRYFYLKLIYKITKVGGPTNRGSGIVIGR