Protein Info for ABIE41_RS24100 in Bosea sp. OAE506

Annotation: ligase-associated DNA damage response exonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 TIGR04122: putative exonuclease, DNA ligase-associated" amino acids 17 to 343 (327 residues), 473.6 bits, see alignment E=1.2e-146 PF00753: Lactamase_B" amino acids 36 to 176 (141 residues), 30 bits, see alignment E=4.9e-11

Best Hits

KEGG orthology group: K07577, putative mRNA 3-end processing factor (inferred from 73% identity to mno:Mnod_1540)

Predicted SEED Role

"mRNA 3-end processing factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (360 amino acids)

>ABIE41_RS24100 ligase-associated DNA damage response exonuclease (Bosea sp. OAE506)
MTLARRNAPGTMRPSDLLIPTPAGLWCPPADIYIDPVRPVARALITHGHSDHARAGHGAV
LATRETLAIMALRYGEGFTGQRQEAVPGETTRIGEVDFTFVPAGHVLGSAQIVVECGGLR
IVASGDYKRERDPTCAGFEPVPCDIFITEATFGLPVFRHPPAHAEVGKLLESVRLFPERT
HIVGAYSLGKAQRVMALIREAGYERPLYLHGAMEKLTEFYLSEGAQLGEVRKVVAAERKA
LGGEIVICPPSAIQDLWARKFPDPVTSFASGWMRIRARARQKGVELPLIVSDHADWDDLQ
ATIRETGAGEIWVTHGEADALVHWCTSVGLRAKPLHLVGYGDEGEAEPVAAAESADAVPV