Protein Info for ABIE41_RS23590 in Bosea sp. OAE506

Annotation: polyhydroxyalkanoate depolymerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR01849: polyhydroxyalkanoate depolymerase, intracellular" amino acids 12 to 401 (390 residues), 507.9 bits, see alignment E=8.9e-157 PF06850: PHB_depo_C" amino acids 202 to 402 (201 residues), 295.4 bits, see alignment E=9.3e-93

Best Hits

KEGG orthology group: None (inferred from 67% identity to rva:Rvan_0929)

Predicted SEED Role

"Intracellular PHB depolymerase PhaZ2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>ABIE41_RS23590 polyhydroxyalkanoate depolymerase (Bosea sp. OAE506)
MLYLAYQTQADFMNPARMLAQSALAAIGARAMSGQPMDWRATAAAYEMVTRAGLTHERPP
YEIDSVREGNRDVPVTEEVVLTLPFGSLLRFRKDSETPQAKVLVVAPMSGHFATLLRNTV
ATLLRDHDVYITDWHNARDVPLEAGPFGYDDYVDTLIRFVETLGAETHIVAVCQPCVQVL
TAAAVMAQAGSPFQPRSMTLMAGPVDTRVNPTTVNKLAMDKPIDWFRRNLIATVPSRFPG
GGRRVYPGFVQLGAFVAMNMQRHVNAHIDMFLHLATGETEEAQKIKAFYDEYFAVLDLPA
EFYLETVQWIFQEARLAARTLTYRGEPVDCRAIRRTALLTVEGERDDICALGQTSAAHDL
CSGLKPFRKRHHMQAGVGHYGVFSGRKWDGQIYPIVRNMILANS