Protein Info for ABIE41_RS23330 in Bosea sp. OAE506

Annotation: SEL1-like repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1125 transmembrane" amino acids 782 to 802 (21 residues), see Phobius details PF08238: Sel1" amino acids 918 to 948 (31 residues), 11.5 bits, see alignment (E = 2e-05) amino acids 953 to 988 (36 residues), 34 bits, see alignment (E = 1.5e-12) amino acids 989 to 1023 (35 residues), 23.3 bits, see alignment (E = 3.8e-09) amino acids 1026 to 1060 (35 residues), 18.4 bits, see alignment (E = 1.4e-07)

Best Hits

Predicted SEED Role

"TPR repeat, SEL1 subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1125 amino acids)

>ABIE41_RS23330 SEL1-like repeat protein (Bosea sp. OAE506)
MATSLPWSVKGVDPRTRDAAKAAARRAGMTLGEWLDHKLREEAAPELSSPPEQLDIAALS
ERLARLSQGQMDTAPQPAPPLPRDGTARHEIDAVLAQAAQIEKLTRESSAKTAGALDSIA
RWIETAEQRMSSGERAAAERQDRATSVIADAIKTMGERLVEIERRTSEAARAPARSEPAP
RLAFSRDGLAAAVTDIRTRQRMLDDEETAAPRAPTAAAESRISALRQDLRDLSARIAPAA
ARAERPLAPVRAAPPVRDPQIDQIESRIADLGTKLDRLDTRDRLDPILKPLARIESEVSR
LAQDRSGESFQRFELEIAHLAAKVDALTARGSDRTMLAPVQRDIAELRDILASSGNEARL
GELSQQVGALSLEIGRMRDSRPDGRELQGLTSAIDDVRDAILSDRSQSRLQDLEPLEALS
RQIQTLAGKIETRPDRQIEDRIDALQARIEQLAEKGPTGVTRQIEALAGRIENLAASSSL
AHLVSDGQPIQVAQVDLRPVEEMLRNLAEKIDEAGRPGADTGAFDALERQISGLAQRLDA
AAATRSAETGMERTLQDLVLHLRSLREETTEAAERAARAAMSDHLDKAPQASGLSELSTL
LSGLHETQASTGRETQDAIGAVHQTLETIISRLSSLEAELVSDRQAAAAPRTPMPPRVAA
AERAAAKPPAAPAGISLAMEDRIAAPERAPAAKAEPVATTAAAQLNAALDVPLEPGSGRP
RAETAASGVPDPQSIRQNLIAAARRSAKAATEAAATAPAASSETPKGGNRLKEMLEKRKR
PLLLGLAALVLALGTAHLVSGALKGPRTATTGEAVQSPIAPREEAPTSPPAKDQSSALQP
GTVAPQATTLAAVPASAPAAAEITGSTTQPPAPPAAAPVATPTPGTAETVQPVTGLGELP
AGLGGPGLRKAALDGDARAVYELASRAADGPAATRDPKLAMRLFERAAVAGLAPAQFRLG
NMFEKGIGTARDLSLARVWYTRAAERGNAKAMHNLAVLHAEGVSGKPDYASATDWFRRAA
EHGVRDSQYNLAVLLGRGLGAPTDLAQSYLWFAVAAGQGDDDAARKRDEVSQRLSPTDLA
AAKAEAATWKPRQASAAANEVTPPARGWEASPTATAPKPAKPARI