Protein Info for ABIE41_RS23080 in Bosea sp. OAE506

Annotation: LysR substrate-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 210 to 232 (23 residues), see Phobius details PF00126: HTH_1" amino acids 8 to 66 (59 residues), 78.9 bits, see alignment E=2.2e-26 PF03466: LysR_substrate" amino acids 90 to 273 (184 residues), 89.8 bits, see alignment E=1.7e-29

Best Hits

KEGG orthology group: None (inferred from 71% identity to mno:Mnod_7267)

Predicted SEED Role

"FIG049039: Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>ABIE41_RS23080 LysR substrate-binding domain-containing protein (Bosea sp. OAE506)
MAHVLDADQLKTFVAIADTGSFTRAAEIVFKTQSAVSMQMKRLEERVGRPLFGRDGRHAK
LTEDGERLLDYARRIVRLNLECVASFADADLKGRIRLGVPDDYADRYLPEILARFARSNP
RAEVTVVCEPTPMLAERIATGDIDLAIITHVESRGQGEIIRIEPLLWVTSARHGVHEEDP
LPLALGRPNCNWRQAAVDALENKGRRFRVLYASWNSTAVGAAVVAGLAVSVLPESAVRPG
MRILGPAEGFATLPSCKIGLLRTRFDPSVLSNALAEHIIQSLDNLASFKTAAE