Protein Info for ABIE41_RS23040 in Bosea sp. OAE506

Annotation: PAS domain-containing sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF08448: PAS_4" amino acids 24 to 133 (110 residues), 30.9 bits, see alignment E=6.7e-11 PF07568: HisKA_2" amino acids 151 to 224 (74 residues), 63 bits, see alignment E=5.9e-21 PF07536: HWE_HK" amino acids 151 to 216 (66 residues), 28.4 bits, see alignment E=5.9e-10 PF13581: HATPase_c_2" amino acids 239 to 337 (99 residues), 39.9 bits, see alignment E=9.7e-14 PF02518: HATPase_c" amino acids 249 to 338 (90 residues), 44.6 bits, see alignment E=4.6e-15

Best Hits

KEGG orthology group: None (inferred from 56% identity to avi:Avi_1193)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (358 amino acids)

>ABIE41_RS23040 PAS domain-containing sensor histidine kinase (Bosea sp. OAE506)
MPTPKPTPTPPLALGLALAVISTSDAPLLLLDAELAVIVASRSFCRAFQCDPAIVVGQPM
ATIGGGEWNVPQLDSLLRATAAGFAEVEAYEMTLQQGADNPRRLVINAHKLEDAEGGEIR
LLLSVADVTDARRSEKQKDDLLREKAILLQELQHRVANSLQIIASILMQSARKVQSEETR
GHLQNAHSRVMSIAALQQQLAKSQLGSVALRAYLTNLCRSIAASMIPDPALLSLEVEIDD
STVEADISISLGLIVTELVINSLKHAYPDGRGGKIRVGYHASEAEWALTICDDGVGMPDP
GEDSKGGLGTSIVKALAQQLGAEITVFDAKPGTVVTVRRSLKQRADEKPLLGEGVAYI