Protein Info for ABIE41_RS22795 in Bosea sp. OAE506

Annotation: cytochrome d ubiquinol oxidase subunit II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 transmembrane" amino acids 6 to 34 (29 residues), see Phobius details amino acids 58 to 97 (40 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details amino acids 156 to 180 (25 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details amino acids 299 to 321 (23 residues), see Phobius details TIGR00203: cytochrome d ubiquinol oxidase, subunit II" amino acids 5 to 330 (326 residues), 161.5 bits, see alignment E=1.7e-51 PF02322: Cyt_bd_oxida_II" amino acids 5 to 323 (319 residues), 329 bits, see alignment E=1.5e-102

Best Hits

KEGG orthology group: K00426, cytochrome bd-I oxidase subunit II [EC: 1.10.3.-] (inferred from 65% identity to mes:Meso_4065)

Predicted SEED Role

"putative Cytochrome bd2, subunit II" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>ABIE41_RS22795 cytochrome d ubiquinol oxidase subunit II (Bosea sp. OAE506)
MEWYLPVIWAGLIGTAVMLYVVLDGFDLGIAILFPTTRDEGERDQMMNSVAPFWDGNETW
LVLGGGGLWVAFPTAYAIIMPAFYLPVTLMLLALIFRGVAFEFRWVAKPKHKVWDLAFWL
GSTVAAFSQGLILGGMIQGITVVDRQFAGGPFDWFTPFTLMCGAGVVVGYALLGATWLIY
KTEGRVAERARSQAKVLLLGLLAFALIVSLWTPYAHPRIAERWFTWRNMALLWPFPVLTA
LCGFLAWRRLHGRHEFTPFALTIAIFVLCFLGLAISNYPYLVPPDLTIWDVAAAPSSHIF
VLIGVTFLLPMILFYTAFVYWTFRGKVKADSGYH