Protein Info for ABIE41_RS22680 in Bosea sp. OAE506

Annotation: tripartite tricarboxylate transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 42 to 69 (28 residues), see Phobius details amino acids 109 to 133 (25 residues), see Phobius details amino acids 140 to 162 (23 residues), see Phobius details amino acids 167 to 185 (19 residues), see Phobius details amino acids 197 to 221 (25 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 317 to 343 (27 residues), see Phobius details amino acids 355 to 381 (27 residues), see Phobius details amino acids 388 to 407 (20 residues), see Phobius details amino acids 414 to 443 (30 residues), see Phobius details amino acids 469 to 490 (22 residues), see Phobius details PF01970: TctA" amino acids 21 to 439 (419 residues), 532 bits, see alignment E=4.7e-164

Best Hits

Swiss-Prot: 62% identical to YZ2R_AGRVI: Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region from Agrobacterium vitis

KEGG orthology group: K07793, putative tricarboxylic transport membrane protein (inferred from 78% identity to mea:Mex_1p1108)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (500 amino acids)

>ABIE41_RS22680 tripartite tricarboxylate transporter permease (Bosea sp. OAE506)
MMDMFANLSLGFGVALSLQNLALCFAGCLVGTLIGVLPGVGPIATIAILLPITFGLDPVG
ALIMLAGIYYGAQYGGSTTAILVNIPGEATSVVTTLDGHQMAKQGRAGVALGTAALGSFF
AGCVATVFIAALGAPLTKLALLFGPAEYFSLMVMGLCFAVVLARGSILKAFCMIMLGLLL
STVGTDLETGQERMTFGFAPLADGIDFAVLAMGVFGFAEVLRNLENPETRDVVKTKIGRL
LPDWNDIKQSTAPVLRGTFLGGILGILPGNGAVLGPFASYTLEKKLAKDPSRFGKGAIEG
VAGPESANNAGAQTAFIPLLTLGIPPNAVMALMVGAMTIHGIIPGPQVMTKNPELFWGMI
ASMWIGNLMLLVINLPLVGLWVKLLQVPYRLMFPSILIFCCIGIYSVNNQPVDVAFTAMF
GLFGYLLIKLGFEPAPMLLGFVLGKLMEEKLRQALIISRGSFMTFVERPISAGLLIVAVA
ILVIALLPSINKKRDEVFTE