Protein Info for ABIE41_RS22650 in Bosea sp. OAE506

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1004 PF00989: PAS" amino acids 639 to 751 (113 residues), 44.3 bits, see alignment E=4.9e-15 TIGR00229: PAS domain S-box protein" amino acids 640 to 761 (122 residues), 62 bits, see alignment E=3e-21 PF13188: PAS_8" amino acids 642 to 688 (47 residues), 29.8 bits, see alignment 1.3e-10 PF13426: PAS_9" amino acids 649 to 753 (105 residues), 36.3 bits, see alignment E=1.7e-12 PF00512: HisKA" amino acids 774 to 843 (70 residues), 68.7 bits, see alignment 1.1e-22 PF02518: HATPase_c" amino acids 890 to 999 (110 residues), 76 bits, see alignment E=9.4e-25

Best Hits

Predicted SEED Role

"Sensory histidine kinase AtoS" in subsystem Orphan regulatory proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1004 amino acids)

>ABIE41_RS22650 ATP-binding protein (Bosea sp. OAE506)
MSEAGRDWAGLGTAAAADEHLASFAADGALLLWDREADRPGHANAAAQVLLATSGNLPAA
TRQRLALLAGGLASRQGVRLERLRLTSGFAATLVTCGCKLLDGDEAGPVLALAIQASELR
RLGITPPPPAAPAQEPAPLAAAEPAPIANAVPPARAIRFLWQSDTEARITSLSANLVELA
GPEAVSSFTGRLWSELIGATIADRTGGLLARLTGSTTWSGHEILWRTGPDEGARVELSGV
PVLDAARQVAGFRGFGLVRPGAREAFPAPEPTQSLTEAEPDAPIEPQDEVVEAPLLQPDP
VEALDAAVVAPAEAMIEEEDVSAATAAEAVDETIADEAQLPAEDEADPADLAAFSDPDDD
AVATAPAVEPSAATEENASGDAGTAPAPAAPGNIVPLRNGHLAPVRPIIEPSKTHLSSAE
RNAFREIAKALGARMAGDDETAAPRLPPAAPLRLKDREAAASTDADAQAEPAAAAPEGRP
DGGRAAAAKPRRTNSHADLLDKLPIAVLVNRDDTPLYANRTMLDLLDYADLDDLASGGGV
SRLIKDAERTDGGAMTLLDRLGHLVKVDAVLSSVFWQGEAATLMAFRHPDGGGEVPVLTP
EEAEEAELAAEFEAEAFESAARVEALRLDADVRDARIAELVAMLDTATDGVVTVDERGRI
LSLNKTAEALFGYDQREVTGELFTLLFAGESHAPALDYLEGLKGGGVASVMNDGREVVGR
VRQGGKIPLFMTMGQIAEGTERRFCAVLRDITAWKKTEGELVEARKAAEKASAQKSDVLA
KISHEIRTPLNAIIGFAEVMAEERFGPIANERYKEYLRDIHQSGGYVISLVNDLLDLAKI
EAGKLDLDFVSVNLNEIALSAVSLLQPEAQRGRVVLRSGLSPKLPPVVADQRSIRQIVIN
LLSNAVKFTDAGGQVIISTALGDQGEAILRVRDTGIGMDDKEIELALEPFRQVPTTRRAG
GTGLGLPLTKALVEANRAAMSITSVKKEGTLVEITFPPQRVLAG