Protein Info for ABIE41_RS22485 in Bosea sp. OAE506

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 564 transmembrane" amino acids 31 to 53 (23 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details PF00672: HAMP" amino acids 216 to 264 (49 residues), 38 bits, see alignment 1.7e-13 PF00015: MCPsignal" amino acids 382 to 529 (148 residues), 96.2 bits, see alignment E=2.1e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (564 amino acids)

>ABIE41_RS22485 methyl-accepting chemotaxis protein (Bosea sp. OAE506)
MMSFKRAGTTDTAAQTPATARRWGRSLSSQIAAAAVAIVAVAIMLVVVAAARYNDTKTRD
DLEQKMKSLVLMVVNASPSLILARDTITLTQILDSLRRDPDFEAGIVADDLSSLASAGRN
EEARLALTPRSLTTLLKREPWEILKDTDTAEIEEDRFVTWLHVVRVGGHRKQIGYIAMRF
DKSRLLARAKFEEVATIGFGVLILLVLGPLLWFSLSRTMKPLKSMTRAIVSMSDGQLDTP
IDAMARQDEIGAIAHALGVLKLRLAERAALQEKQHVNETERRLHQQSVDAAIGVFRAEVG
VALEAFKSNADRMSEASNGLARVAAESSGRAARAAQNAHGASGNVESAAQAAEQMGAAIR
EVEFQVRRVRTEIVEAASISRDTAGSVRALDETARAIGEVVNLIRDIAAQTNLLALNATI
EAARAGEAGRGFAVVASEVKSLASQTADATDRIVAQVGAIQGATGQVVGSIQNIAERMNA
IENFANSVAVSIEQQAIATGEIASGVAMASSSALSVSSDLSVLADSVEETGRSAEEVRGA
AGEVAAQALRLRSTVDQFLQSVAA