Protein Info for ABIE41_RS22015 in Bosea sp. OAE506

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 37 to 60 (24 residues), see Phobius details amino acids 102 to 127 (26 residues), see Phobius details amino acids 137 to 171 (35 residues), see Phobius details amino acids 223 to 247 (25 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details PF12911: OppC_N" amino acids 26 to 68 (43 residues), 29.8 bits, see alignment 4.3e-11 PF00528: BPD_transp_1" amino acids 117 to 299 (183 residues), 86.2 bits, see alignment E=2.4e-28

Best Hits

Swiss-Prot: 51% identical to Y4TQ_SINFN: Probable peptide ABC transporter permease protein y4tQ (NGR_a01420) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 75% identity to mrd:Mrad2831_4368)

MetaCyc: 34% identical to nickel ABC transporter membrane subunit NikC (Escherichia coli K-12 substr. MG1655)
7.2.2.i [EC: 7.2.2.i]; 7.2.2.- [EC: 7.2.2.i]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.2.2.i

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>ABIE41_RS22015 ABC transporter permease (Bosea sp. OAE506)
MQSSIPAPAALAAAPEPAVAPRLGRFKRFRRYLRRHPAVAIGGSLLVLMALIGLFAPLLW
TVDPTAIATSRRTRVPSELYWFGTDMLGRDIYSRVVYGARVSLVVGFSVAILSSVIGLTI
GLFAGFVRWADGIVMRIIDGMMSIPPILLAIALMALTRGSIQNVIIAITIAEIPRVARLV
RGVVLSLREQPYVEAAISNGARTPRIILRHILPNTFAPMSVQATYICASAMIIEAILSFI
GAGIPPATPSWGNIMAEGRALWQVKPHIILFPAIFLSITVLAVNLLGDGLRDSLDPRLAK
AL