Protein Info for ABIE41_RS21920 in Bosea sp. OAE506
Annotation: ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 43% identical to SSUB1_AGRFC: Aliphatic sulfonates import ATP-binding protein SsuB 1 (ssuB1) from Agrobacterium fabrum (strain C58 / ATCC 33970)
KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 64% identity to pgv:SL003B_0792)Predicted SEED Role
"ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" in subsystem Alkanesulfonate assimilation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (271 amino acids)
>ABIE41_RS21920 ABC transporter ATP-binding protein (Bosea sp. OAE506) MDTASLSTPHAVRPEGRKPLVCVRHVSKQFGNGTLAVRDVNLSLGDGEFVSLLGPSGCGK STLLRMIAGLGAPSSGTIEWPTTVHDASGEPQRDLGFVFQDPTLMPWATALANVMMPLTL KGVRTSEARERAAAMLALVGLTGFEKSYPRELSGGMKMRVSIARGLVLRPKILLMDEPFA ALDEITRHRLNDDLLELWWKEKFTAVFVTHSVFESVYLSKRIVVMAARPGRVMADLDVDA PYPRDDLFRTSPEYAHLCRVVSGKLKEAIGS