Protein Info for ABIE41_RS21040 in Bosea sp. OAE506

Annotation: SURF1 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 202 to 223 (22 residues), see Phobius details PF02104: SURF1" amino acids 12 to 213 (202 residues), 192.7 bits, see alignment E=5e-61

Best Hits

KEGG orthology group: K14998, surfeit locus 1 family protein (inferred from 69% identity to mpo:Mpop_4850)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (237 amino acids)

>ABIE41_RS21040 SURF1 family protein (Bosea sp. OAE506)
MVLVALLALAGIAGFTRLGVWQVERLFWKRALIERVEARIHADPVAAPGPSAWPAIAEAE
YTRVVVKGRFLHDREVLVQAVTERGAGSWVLTPLVTGSGFTVLVNRGFVPPERRERASRA
QALPEGTVTVTGLLRLSEPGGGFLRANAPAEDRWHSRDVAAIAAARQLTQAAPYFVDADA
TPNAGGFPVGGLTVVRFSDNHLVYAATWFALAAMLAAALVFVLRHEFRLRRAREQAH