Protein Info for ABIE41_RS20705 in Bosea sp. OAE506
Annotation: ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 54% identical to BRAG_PSEAE: High-affinity branched-chain amino acid transport ATP-binding protein BraG (braG) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
KEGG orthology group: K01996, branched-chain amino acid transport system ATP-binding protein (inferred from 64% identity to xau:Xaut_1566)Predicted SEED Role
"Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (239 amino acids)
>ABIE41_RS20705 ABC transporter ATP-binding protein (Bosea sp. OAE506) MTSQSPLLSIAGLNAGYGGLDVLHDVSIAVGAGEFVCVIGANTAGKSTLLRTISGLVSAR GSIRFDGTELVGRPSHAIPALGIAHVPEGRHVFPEMTVEENVMLGAYAVRSASDLAVRRD RVLTMFPRLRERLGQLAGTLSGGEQQMVAIGRALMLQPRLLLLDEPSHGLAPKIVDELHD TFLAVSRTGTSILLVEQNTTLALSVAGRGYVLESGRVVLSGTSAELSGNDAVRSAYLGL