Protein Info for ABIE41_RS20615 in Bosea sp. OAE506

Annotation: extracellular solute-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF13531: SBP_bac_11" amino acids 33 to 286 (254 residues), 76.2 bits, see alignment E=6.6e-25 PF01547: SBP_bac_1" amino acids 37 to 280 (244 residues), 48.4 bits, see alignment E=2.7e-16 PF13416: SBP_bac_8" amino acids 42 to 300 (259 residues), 68.6 bits, see alignment E=1.6e-22 PF13343: SBP_bac_6" amino acids 77 to 311 (235 residues), 96.2 bits, see alignment E=4.4e-31

Best Hits

KEGG orthology group: None (inferred from 77% identity to sno:Snov_4303)

Predicted SEED Role

"Ferric iron ABC transporter, iron-binding protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>ABIE41_RS20615 extracellular solute-binding protein (Bosea sp. OAE506)
MKTLVLALAFGLASSVALAQAPAGKVTVVTSFSKDVTDPIKKAFEKATPGVTLEVQNRNT
NAGVKYLEETKANNQVDLFWASAPDAFEVLKGKQLLSAYKPKATGIPEKIGSYPINDPAG
FYAGFAASGYGIMWNERYARANKLPEPKEWQDLAKPVFFDHVAIAAPSRSGTTHLTIETI
LQGEGWDKGWRTIKEMAGNFRAINERSFGVPEQVNSGQVGVGIVIDFFAFSAQASGFPVK
FVYPSVTTVVPANVGIVTNGPNKAAAEAFVEFLLSPAGQEVLLEPGIRRLPVNPAVYAKA
GADYPNPFTDPRFQKMIGFDVDKSEARTAVVDTLFDQLISFQLDALKGVTKTLHEVEAAL
AKKPSPQAKALLDEARTLIAAMPVGEAQASSAELRGAFTGGKEKGARQAEVEAQWASFAR
DSYAKAKAKAEEALKAAK