Protein Info for ABIE41_RS20550 in Bosea sp. OAE506

Annotation: LacI family DNA-binding transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 PF00356: LacI" amino acids 28 to 72 (45 residues), 56.1 bits, see alignment 5.3e-19 PF00532: Peripla_BP_1" amino acids 84 to 330 (247 residues), 92.7 bits, see alignment E=6e-30 PF13407: Peripla_BP_4" amino acids 86 to 303 (218 residues), 39.6 bits, see alignment E=9.7e-14 PF13377: Peripla_BP_3" amino acids 193 to 353 (161 residues), 103.5 bits, see alignment E=2.8e-33

Best Hits

KEGG orthology group: None (inferred from 55% identity to bgd:bgla_2g01680)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (359 amino acids)

>ABIE41_RS20550 LacI family DNA-binding transcriptional regulator (Bosea sp. OAE506)
MTRVKTVDRRAAMVPSEGRGEARRSVGLREVAQAAGVSTATVSRAINNPDVVSADLRERI
AVAVEQLGWVPDGAARALSTRRSQTIGAVFPALSIGDFAHATQAIQSELSQAGYTLLLAC
SEYDPDLELRQVRKFVERGVDGLILVGQAHHPELVPLLRRRDMPFVNTFVYDSQTHGTCV
GPDNRKALMMMTEHLADLGHVRFGVIAQSTLNNDRASARLDGVRDALASRGLAVRPQHFA
MGEWSIADGRRFLRSLWQTDPKPTAIICGNAHLAVGAVLEALAMGLRLPADLSIVGYDDI
EIMSHLPVPVTTVRVPGAEIGRVAAQVLTARLEGRDCAASFEAEAELVIRASSGPPPAA