Protein Info for ABIE41_RS20140 in Bosea sp. OAE506

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1041 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 411 (25 residues), see Phobius details amino acids 432 to 457 (26 residues), see Phobius details amino acids 464 to 486 (23 residues), see Phobius details amino acids 530 to 547 (18 residues), see Phobius details amino acids 861 to 879 (19 residues), see Phobius details amino acids 886 to 906 (21 residues), see Phobius details amino acids 912 to 939 (28 residues), see Phobius details amino acids 960 to 982 (23 residues), see Phobius details amino acids 989 to 1014 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1015 (1012 residues), 969.1 bits, see alignment E=2.5e-295 PF02355: SecD_SecF" amino acids 854 to 1015 (162 residues), 20.9 bits, see alignment E=2.1e-08

Best Hits

Swiss-Prot: 45% identical to MDTC_CROS8: Multidrug resistance protein MdtC (mdtC) from Cronobacter sakazakii (strain ATCC BAA-894)

KEGG orthology group: None (inferred from 70% identity to mci:Mesci_3245)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1041 amino acids)

>ABIE41_RS20140 efflux RND transporter permease subunit (Bosea sp. OAE506)
MSLSAFCIRHPVATILMSASLVMAGLFAWRFLPVAALPRAEFPVVNVSAQLPGASPDTMA
TSVATPLIKQFATIAGIDSIATTNAQGSTSIAIQFVLNRNIDAAAADVQAAIARAQKQLP
LEMTTPPSYRKVNPADAPIVLLALKSDLIPLSQLDAFAQQVISPALSTVDGVAQVQIFGS
QKYAVRIQIDPVALAARGIGVDELQSAITATNANTPVGTLQSTNQQLTIQARTQLANAAQ
FANVIVANRNGRPVRLGDVAKVIDSVENMQTASTYDGIPAVVLAVQRQPDANTVAVVDKV
KAMLPAFEEQLPAAASLSLLNDRSQSIRQAVEDVQFTLLLTIALVVMVIFLFLRRLAATF
IPAVAVPISIVGTLAAMYAFGFSIDNISLLGLTLSVGLVVDDAIVMLENIVRHMEEDGLS
AFDAALKGSSEIGFTIVSISLSLVAVFIPVLLMGGVIGRIFNEFAVVVTVSILASAFVSL
TLTPMLCARLLSHHGPAQEENAFGRALERGFSVLLAGYDRALVLCLRIKPVILLTFFATL
AATIWLLQTTPKGFFPQEDIGQLQVSTEARQDISFTAMKQAQDEVARVFRASPHVAHVAS
TVGGSSGSAGALNAGRLFVELKPQGERPALQTVLADLRRDLSRVAGINVFMTPVQNLNIG
ARAAKSQYQLVVQGLDQGLMNDWAVRLADAMGRDRGSFADVTTDLQNNALEATLVVDRDK
ANQLKIGADVLRSTLYSGFGVRQVSTIYTAGDSYQVVVEFDPKGGWTPDRLDQIRVRAGN
GTLVPLGAFAHVERRAGQLTVNQLGQLPAVTIAYNLPAGVALGDSVKRIEALKAEIGLPA
SLSTTLAGTAKTFQDSLANQGLLIAGAILTIYIVLGILYESFIHPLTILTGLPSAAIGAL
GALRLFDLDLSVIAIIGLLMLIGIVKKNAIMMIDVALVLKREGKSAQEAIHQACVMRFRP
ILMTTLAALMGTLPIALGAGASAELRQPLGIVVVGGLMISQVLTLFITPVLFIYMDRLSE
GLGRLFSRSRDEGKPLPAPAE