Protein Info for ABIE41_RS19445 in Bosea sp. OAE506

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 678 TIGR01760: phage tail tape measure protein, TP901 family, core region" amino acids 62 to 384 (323 residues), 44.9 bits, see alignment E=4.1e-16 PF10145: PhageMin_Tail" amino acids 100 to 286 (187 residues), 73.9 bits, see alignment E=8.2e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (678 amino acids)

>ABIE41_RS19445 phage tail tape measure protein (Bosea sp. OAE506)
MVVAVRAEALITAQNRLRPGLTGAARELDRFRAQQTKATSAFGSTAARAFAAVGGIYAGG
RVLQGLNQASKRFAEVDRAMARTGITGDANVRQTREGTEELRNLARDTATLFDPAQKGLD
AITSSGRDFTDAMKMMPSVLKTAQASGAGVDDIANTSTALIDHMKISIEGLAEAQDTLAM
GGKLGKFELKDQARYLPSLLPAYKAVGRTGQEGLRSLIAMLQVIRSGTGTAEEAAASAQN
IFSKMESDETVKNFKEMGVDLPKAMTKARKEGKDLVAVFLELSNKALKGDLSKVPQLFKD
MEVQRGMRPLLENLQKILDYTGQLKNAKGTIDKDFIRISADAQATFDRFAESSDRAKTAL
GALAAEATAPIVKAAADRLNELAQSMERAAAAARDDGFGAAVKRLAKDAVDSVEPYAPKP
QDDLTELQAGQDASTISRIRDRGQRANRKPRDPYEAANLDEDIAQAEQTVAATTGPQRER
AQLRLDALRNKRIGKVTTFDLTEEEIKAFQRDQIARMPPLPMLPKTAASATPEQAPDLLW
PNAPSFDAAREADREARRGKAFRSDTSGQPAFAKGMGQKGLVQPPKRPVELKGAIDIPVQ
PLEEVQSKVSSVANSFGLLGPAAQTAGSAMATGISSGEDALDRAIAKAQRLQQILNGLKV
PPLGGGGGGFDTGRQGPN