Protein Info for ABIE41_RS18720 in Bosea sp. OAE506

Annotation: TRAP transporter large permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 transmembrane" amino acids 6 to 33 (28 residues), see Phobius details amino acids 49 to 71 (23 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 166 to 191 (26 residues), see Phobius details amino acids 212 to 234 (23 residues), see Phobius details amino acids 240 to 259 (20 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details amino acids 311 to 329 (19 residues), see Phobius details amino acids 334 to 351 (18 residues), see Phobius details amino acids 357 to 380 (24 residues), see Phobius details amino acids 392 to 413 (22 residues), see Phobius details PF06808: DctM" amino acids 7 to 414 (408 residues), 362.4 bits, see alignment E=1.5e-112 TIGR00786: TRAP transporter, DctM subunit" amino acids 16 to 420 (405 residues), 378.2 bits, see alignment E=2.2e-117

Best Hits

Swiss-Prot: 39% identical to SIAM_VIBCH: Sialic acid TRAP transporter large permease protein SiaM (siaM) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: None (inferred from 63% identity to csa:Csal_0756)

MetaCyc: 34% identical to 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-235

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>ABIE41_RS18720 TRAP transporter large permease (Bosea sp. OAE506)
MAITIILAFVALFIFGLPVVVAIAVPALLYVMLSGFPLELVAQRMTYALDSFPLVAVPVF
IFVGSLMNQAGITSHIYRFAHTLGGRVPGGLAQVNVIGSLVFSGTSGAALADIGGLGRIE
IRAMVRAGFTRAYSAAITGASAVVGPIFPPSIPLIIYGSATSVSIVQLLVAGIMPALLYV
ALLMLTVAWLAKRHNHPRSKRWPTFRELWTTFWPAAPALMTPLLLIGGMLGGYFTPTEAT
SITVAYILLIAMAFYGGLTWERLRFALFDTVKTSSAVLIIVSAAALFGWILTVEQLPQTF
TRSLLSISTDPIVLLLIVNMLLLIVGMFLDSTTATLLVAPLVTAPLVLAGVDPVHLGIIF
VFNLMIGLLTPPMGLALFLLSDIAKTSMPSVLKAVIPFYIPLFGALAIITFWPDLTLWLP
RMLR