Protein Info for ABIE41_RS18635 in Bosea sp. OAE506

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1042 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 347 to 367 (21 residues), see Phobius details amino acids 372 to 393 (22 residues), see Phobius details amino acids 401 to 424 (24 residues), see Phobius details amino acids 440 to 464 (25 residues), see Phobius details amino acids 474 to 500 (27 residues), see Phobius details amino acids 533 to 553 (21 residues), see Phobius details amino acids 867 to 885 (19 residues), see Phobius details amino acids 892 to 911 (20 residues), see Phobius details amino acids 917 to 937 (21 residues), see Phobius details amino acids 968 to 988 (21 residues), see Phobius details amino acids 994 to 1017 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 20 to 1015 (996 residues), 515.1 bits, see alignment E=1.8e-158

Best Hits

KEGG orthology group: None (inferred from 68% identity to bbt:BBta_2039)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1042 amino acids)

>ABIE41_RS18635 efflux RND transporter permease subunit (Bosea sp. OAE506)
MSTSGHEAPHQRARFNLSGWALGHRSLVWYFMIVCAVAGLASYFNLGRAEDPDFTIKTMI
IQANWPGATLEDTLNQVTDRIEKKLEELPAFDYARSLNKPGQTTIFVNLKDTTQGPQVRA
TWTRVRQIMADLQPQLPQGVQGPFFNDDFGDVFGNIYAFTADGFTPRQVRDHVERARARL
LTLPDAGKVELVGAQDEVIYLEFSTREIAALGLTQTMVVDALRGQNAITPSGVLEAAGER
VSVRVSGQLASEQALRDINLRINDRFFRLSDVATITRGYEDPPTALFRYKGEPAIGLAVG
MKPGSNLNAFGEELETMLAAIERDLPIGIDVHLVADQPKIVEEAVGGFVKALIEAVVIVL
AVSFISLGFRAGLVVAVTIPLVLAITFLAMELYGVSLQRISLGALIIALGLLVDDAMIAV
EMMVARLEAGDPLPTAASYVYTHTAFPMLTGTLVTVASFFPVAFNNGSAGEFTFTLFVVI
AVSLIVSWVVAVLFVPLLGVTMLPERLPKHDTQGGRFGRLFDRLLLGCMRRRWTTIAATV
AIFALSVFGMRFVQQQFFPLSDRVEVVVDWTARQNASITTTKAEMDHFEKTVLAGDPDIE
RWSSYVGQGAVRFMLSFDVQPASPNFGQIVIITKDLKARDRVLARLNKVVEKDYLGSDVF
VHLLEIGPPVGRAIQYRISGPDLQGVRDQAQRVAQVMAGNPQVGRIISDWNEPARVVKVD
VLQDKAAQLGVTSESIATVLNTVVGGVTATQIRDSIYLIDVIGRARDIDRNSVESLQNLQ
IQTKDGKTVPLAAVAALSYTLEQPAVWRRARAATITLKAAPLGAVQPATVVEQLTPKIAE
VVNGLPAGYRIDVGGAVEESGKGQAPIIKVVPFMLLTMLTILMIQLQSFQRLVMVVVVAP
LGLIGVVAALLPSGAPLGFVAILGVLALIGILIRNSVILVHEIEELQEGGMDGWTAVLEA
SRHRMRPIMLTAAAASLALIPIAFEVFWGPMAFAMMGGIIVGTVLTLLFLPALYVAWFRL
KEPPPSEAAPEGEARPLAPAIA