Protein Info for ABIE41_RS17805 in Bosea sp. OAE506

Annotation: CvpA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 signal peptide" amino acids 5 to 5 (1 residues), see Phobius details transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 51 (21 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 104 to 128 (25 residues), see Phobius details PF02674: Colicin_V" amino acids 6 to 148 (143 residues), 111.6 bits, see alignment E=1.6e-36

Best Hits

KEGG orthology group: K03558, membrane protein required for colicin V production (inferred from 56% identity to mrd:Mrad2831_3895)

Predicted SEED Role

"Colicin V production protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (227 amino acids)

>ABIE41_RS17805 CvpA family protein (Bosea sp. OAE506)
MPVTILDLVVIGVVLISALLAAVRGLTREVLAIASWAAAAAVAWIFHPQLLPIMKQYIPN
DTIALIAAIASLFLVTLIVVSLVTARISDFVLDSRIGALDRTLGFVFGAGRGLLLAVIGY
LFFAALVGAEKMPPWARDAKAKPMLEETGRSLITMLPQDVNADFLKTLLKPKSGPEPTEA
PAEEPRQPATPGTEPQRRTEVPNATDRQALQRAIDGTRGASPAPTRP