Protein Info for ABIE41_RS16810 in Bosea sp. OAE506

Annotation: type II toxin-antitoxin system RatA family toxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 PF10604: Polyketide_cyc2" amino acids 5 to 142 (138 residues), 39 bits, see alignment E=1e-13 PF03364: Polyketide_cyc" amino acids 10 to 140 (131 residues), 115.6 bits, see alignment E=1.8e-37

Best Hits

KEGG orthology group: None (inferred from 66% identity to mrd:Mrad2831_2175)

Predicted SEED Role

"Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (159 amino acids)

>ABIE41_RS16810 type II toxin-antitoxin system RatA family toxin (Bosea sp. OAE506)
MPMFNSARRVRHTPEQMFALVADVEKYPQFLPLCEGLTVRRRTPQEGGGEVLLADMSVGY
KAIRETFTSRVTLDPANLRILVEYVDGPFRYLENRWTFKPHESGCEIGFFISYEFASRML
GLLMGAMFDKAFRKFAEAFERRADLVYGTGAARGAITAS