Protein Info for ABIE41_RS16765 in Bosea sp. OAE506

Annotation: GTPase HflX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 TIGR03156: GTP-binding protein HflX" amino acids 47 to 395 (349 residues), 439.6 bits, see alignment E=3.6e-136 PF13167: GTP-bdg_N" amino acids 53 to 138 (86 residues), 94.7 bits, see alignment E=8.1e-31 PF16360: GTP-bdg_M" amino acids 141 to 220 (80 residues), 101.8 bits, see alignment E=4.8e-33 PF01926: MMR_HSR1" amino acids 228 to 348 (121 residues), 71.8 bits, see alignment E=1e-23 PF19275: HflX_C" amino acids 375 to 445 (71 residues), 38 bits, see alignment E=3e-13

Best Hits

KEGG orthology group: K03665, GTP-binding protein HflX (inferred from 67% identity to met:M446_5943)

Predicted SEED Role

"GTP-binding protein HflX" in subsystem Hfl operon or Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>ABIE41_RS16765 GTPase HflX (Bosea sp. OAE506)
MGARSDADEARAATKPLDAIEREIAANTRAYVIGPYQQRRGATDANQRSFAARLDEGVGL
AAAIDLTVVEPIQVMLTALRPATYLGKGKVEEIAERIKIEEIGLVVMDCALSPVQQRNLE
KAFGCKVIDRTGLILEIFGRRARTKEGALQVELAHLNYQKSRLVRSWTHLERQRGGFGFL
GGPGETQIEADRRIIQERMTKIERDLEAVKRTRGLHRASRKRVPYPVVALVGYTNAGKST
LFNRLTSAEVLAQDMLFATLDPTARALKLPHGARIMLLDTVGFISDLPTQLVAAFRATLE
DAIEADVLLHIRDVAHEDTTAQAADVQAILRDLGIDPDDGQRVVEVWNKSDLLAPEERER
QLGLAGLKPEVSRPVLVSAVTGDGMGRLTDAIESRIARSRPIYRLALPPGDGQSLAWLHA
NGEILERRDAEDGTLDLTVRLPPEREGAFGARFPEAQREN