Protein Info for ABIE41_RS16450 in Bosea sp. OAE506

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 PF00165: HTH_AraC" amino acids 213 to 251 (39 residues), 32.7 bits, see alignment 6.1e-12 amino acids 262 to 302 (41 residues), 34.8 bits, see alignment 1.4e-12 PF12833: HTH_18" amino acids 224 to 303 (80 residues), 80 bits, see alignment E=1.4e-26

Best Hits

KEGG orthology group: None (inferred from 49% identity to bja:bll6962)

Predicted SEED Role

"FIG024214: Transcriptional regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>ABIE41_RS16450 AraC family transcriptional regulator (Bosea sp. OAE506)
MGSPVPLSSDGFFGQRAARHFGVHGQEVSALRLEGELSLVATRLTCGDRLRERTQPAPPD
AAFSLLCPIDRLDGHSCWVAGEPQHHGPLPAGSVSLTDLRDKPQWQLCGRVDALQIYIPV
RALAAVGERRSQAAVGSLRCDAGRPDPILAGLCDTLMRAAQSTGSNTLLIDQLAICLLTH
VAEVYGGPGRADERPSGRLAPWQERRAKEIMAARLASELTISQLASECRLTASHFARAFR
RSTGVAPQRYLMQLRVDEAKRHLATAHLPLSDIALICGFGDQSHLTRVFKQLVGMPPGAW
RRRLEPGADRARLSA