Protein Info for ABIE41_RS16370 in Bosea sp. OAE506

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 227 to 251 (25 residues), see Phobius details amino acids 271 to 297 (27 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 101 (101 residues), 39.5 bits, see alignment E=5.8e-14 PF00528: BPD_transp_1" amino acids 112 to 304 (193 residues), 143 bits, see alignment E=9e-46

Best Hits

Swiss-Prot: 46% identical to GSIC_ECOL6: Glutathione transport system permease protein GsiC (gsiC) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 84% identity to bja:bll4541)

MetaCyc: 46% identical to glutathione ABC transporter membrane subunit GsiC (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"cell processes; transport of small molecules; amino acids, amines, peptides"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>ABIE41_RS16370 ABC transporter permease (Bosea sp. OAE506)
MLRYFAIRFGRALITIALVVTFAFVVLRLSGDPAQIILGPEAPPEAIAAFRAAWGLDDPL
WLQYFHYFGAIAQGELGRSMRDGRAAIELVAERIPVTLALTLPALAIKLCIGVPAGIYAA
LHRGSLADRVVMMLSVAGFTIPSFVLGLTLVLVFAVKLGWLPSGGQDSWRHAILPVLTLG
IGGGAVLARFTRSAMLEVLGQSFIRTASAKGVPWRDVIIGHALPNAAIPTVTIIGFMIGT
LIAGAVVVESVFSWPGVGRLLVVAVANRDLAVVQCILLLVAATMVTSNLIVDFLYGFLDP
RLRQTVGKAA