Protein Info for ABIE41_RS16285 in Bosea sp. OAE506

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF00005: ABC_tran" amino acids 12 to 153 (142 residues), 126.6 bits, see alignment E=1.1e-40 PF08402: TOBE_2" amino acids 264 to 335 (72 residues), 53.4 bits, see alignment E=2.2e-18

Best Hits

Swiss-Prot: 46% identical to POTA_LACDA: Spermidine/putrescine import ATP-binding protein PotA (potA) from Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / JCM 1002 / NBRC 13953 / NCIMB 11778)

KEGG orthology group: None (inferred from 66% identity to pao:Pat9b_5444)

Predicted SEED Role

"Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>ABIE41_RS16285 ABC transporter ATP-binding protein (Bosea sp. OAE506)
MASAYGATTALEPSSLSVAEGEFLTLLGPSGSGKTTLLQLICGLVEASEGRVVIDGRDQS
HMPVHQRDIGLVFQHYALFPHLTVAENIAFPLKMRGRPSAEIGQRVEAALAMVHLGHLAK
RFPRELSGGQQQRVALARCFVYQPSIILMDEPLGALDKKLREHMQIEIKRLHRESGATIV
YVTHDQEEALALSDRICLMNHAKIEQLGTPREIYERPRTAFAADFIGISNIFRGRWDGNG
SLETAHGRFALPRNAASPGAEPALVIRPEHLKIGAPDGNAVTGRVSEIVYAGSETRVIAT
LGDGGQLVLRLGPDDAVPTIDDQIVAGWARERAVLVA