Protein Info for ABIE41_RS16160 in Bosea sp. OAE506

Annotation: ribonuclease E/G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 917 TIGR00757: ribonuclease, Rne/Rng family" amino acids 14 to 582 (569 residues), 518.6 bits, see alignment E=6.2e-160 PF10150: RNase_E_G" amino acids 278 to 548 (271 residues), 345.5 bits, see alignment E=3.3e-107 PF20833: RNase_E_G_Thio" amino acids 560 to 645 (86 residues), 94.5 bits, see alignment E=5.3e-31

Best Hits

Predicted SEED Role

"Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)" in subsystem Bacterial Cell Division or RNA processing and degradation, bacterial (EC 3.1.4.-)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (917 amino acids)

>ABIE41_RS16160 ribonuclease E/G (Bosea sp. OAE506)
MANKMLIDATHPEETRVVVVRGSRIEEFDFEAASRKPLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLADEARADREDERDEEKREKRGRRDRGRRGD
RDGRAKKATSDETVSADAVETDGKEAAMVNEGAPAFGEEFAPAIAESTSEDAAENAAPLT
YETSEEPNGEVEGEPSEARRPSDDDDSGDDHGSEDGDQEEPEQLGGGDALDDMPERPQRS
SRRQYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGKGGGISRKI
TNAEDRKRLKEIAQELEVPEGMGLILRTAGASRTKVEIKRDYEYLMRMWESVRELTLASV
APALVYEEGNLVKRSIRDLYNKDIDEVHVAGDEAYREAKDFMRMLMPSHAKSVKAYREQT
PLFASFGIESQLDAMFSNTVTLKSGGYIVINQTEALVAIDINSGRSTREHNIEDTALKTN
LEAAEEISRQLRLRDLAGLIVIDFIDMEENRNNRAVEKKLKECLKDDRARIQVGRISAFG
LLEMSRQRIRTGVLESSSVPCPHCAGAGMMRSASSVSLQILRALEETLIKSASHNLNVRT
RPEVALYVLNQKRAHLADLEARFNIAVTINTDATLLGTRYFEVERGEFVGNEGRIVPSTI
KAEAVLSDADEDALDAAAEAEAQDAENDVGPTEAVATASREERPEGERGEGGRKRRRRRR
RRRGGERDANGVRLDGGSDDADGGDDDGDEDGDESSAEGEAEDRETAAEPAAAAAEPVAE
PVGPVAEEKPKRARRGRKPKGEAEQPLEAVAETVTAEAPAAEVEAAPVEAEKPKRSRSRK
KVVPITEGGETTEAVAAPAAPEAPAPAPAEAAPVAEPEPAPAPAPRVIEEPVAVVLTPPD
PDRPKRGGWWNKLAGRG