Protein Info for ABIE41_RS14630 in Bosea sp. OAE506

Annotation: 50S ribosomal protein L18

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 PF00861: Ribosomal_L18p" amino acids 3 to 120 (118 residues), 145.1 bits, see alignment E=5.6e-47 TIGR00060: ribosomal protein uL18" amino acids 5 to 120 (116 residues), 138.4 bits, see alignment E=6.6e-45

Best Hits

Swiss-Prot: 69% identical to RL18_AGRFC: 50S ribosomal protein L18 (rplR) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02881, large subunit ribosomal protein L18 (inferred from 70% identity to sno:Snov_1464)

MetaCyc: 50% identical to 50S ribosomal subunit protein L18 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L18p (L5e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (120 amino acids)

>ABIE41_RS14630 50S ribosomal protein L18 (Bosea sp. OAE506)
MSKQTENTARRKARVRRAIKAVANGRARLSVHRTGKQIYAQVIDDTKGVTLASASSLDKD
IRTDLKSGANVEAAATIGKLIAERAVKAGVKDVVFDRGSYMYHGRVKALADAAREAGLNF