Protein Info for ABIE41_RS14565 in Bosea sp. OAE506

Annotation: 50S ribosomal protein L2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 TIGR01171: ribosomal protein uL2" amino acids 3 to 274 (272 residues), 407.2 bits, see alignment E=1.7e-126 PF00181: Ribosomal_L2" amino acids 42 to 119 (78 residues), 106 bits, see alignment E=8.2e-35 PF03947: Ribosomal_L2_C" amino acids 126 to 251 (126 residues), 184.4 bits, see alignment E=8e-59

Best Hits

Swiss-Prot: 84% identical to RL2_XANP2: 50S ribosomal protein L2 (rplB) from Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)

KEGG orthology group: K02886, large subunit ribosomal protein L2 (inferred from 84% identity to xau:Xaut_1682)

MetaCyc: 63% identical to 50S ribosomal subunit protein L2 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L2p (L8e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (280 amino acids)

>ABIE41_RS14565 50S ribosomal protein L2 (Bosea sp. OAE506)
MALKNFKPVTPSLRQLVIVDRSELYKGKPLKVLTEGKSSSGGRNNLGRITVRFRGGGHKR
TLRLIDFKRRGKDGIPAVVERLEYDPNRSAFIALIKYSDGEQAYILAPQRLAVGDSVVSG
PSVDVKPGNAAPMGSLPIGTIVHNVELKIGKGGQLARSAGNYAQIVGRDQGYVIVRLNSG
EQRLISGLCYATVGAVSNPDHMNRNDGKAGRSRWLGRRPHNRGVSMNPVDHPHGGGEGRT
SGGRHPVTPWGLPTKGKKTRSNKRTDTFIVSSRHARKKKN