Protein Info for ABIE41_RS13425 in Bosea sp. OAE506

Annotation: flagellar basal body P-ring formation chaperone FlgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details TIGR03170: flagella basal body P-ring formation protein FlgA" amino acids 211 to 345 (135 residues), 119 bits, see alignment E=7.3e-39 PF08666: SAF" amino acids 222 to 283 (62 residues), 32.7 bits, see alignment E=8.9e-12 PF13144: ChapFlgA" amino acids 222 to 344 (123 residues), 98.9 bits, see alignment E=2.3e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (356 amino acids)

>ABIE41_RS13425 flagellar basal body P-ring formation chaperone FlgA (Bosea sp. OAE506)
MTRSTLRLSLAAALLLGAQAAAAQAPSSARASVAVAALSAPAPATAVPVQPRRLQLRSEL
MLSRDLVSFGDLIAGLSADAASIPAFRAPALGETGTIQVARIVEAARAAGIITSASELEG
SGAAQVVVTRAARRLLASDIEEAVKTGLQERYGVDARAFALTLDGGAPSVAIEPELIGDA
VVSDLTYDARSRRLQARISVPGSMAMRLKPVRVAGQLVETVEVVVPRRAVARGETLGKAD
VLVERRPRDGQANDLIGDPRAATDKVATRALMAGAPLRAGDLRREEIIAKGDLVTLVYES
RGLTITMRGRASEAGAMGDVISVTNPQSKRVLHGTVSGPGRISVQASSAGTVAAAP