Protein Info for ABIE41_RS13090 in Bosea sp. OAE506

Annotation: putative DNA modification/repair radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 TIGR03916: putative DNA modification/repair radical SAM protein" amino acids 1 to 399 (399 residues), 567.2 bits, see alignment E=1.3e-174 PF04055: Radical_SAM" amino acids 57 to 183 (127 residues), 30.9 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: None (inferred from 69% identity to agr:AGROH133_07643)

Predicted SEED Role

"Biotin synthase related domain containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>ABIE41_RS13090 putative DNA modification/repair radical SAM protein (Bosea sp. OAE506)
MEKLEILSDAAKYDASCASSSTTKRNSLKGGLGSTTGSGICHSYAPDGRCISLLKILLTN
YCSYDCIFCINRSSSNVRRARFTVEEVVDLTLSFYKRNYIEGLFLSSGIIRSPDYTMAEL
VRVAQTLREVHGFRGYIHLKLIPSANADLVAQAGLYADRVSINVELPTEVSLERFAPEKR
PREISAAMGGLRLRIEESKAERAKTRRAPVFSPAGQSTQMIVGADGTSDATILQRSAQLY
GSFGLKRVYYSAFSPIPDASRQLPLSEPPLLREHRLYQADWLTRFYGFEVGEILDDGADG
MLDLTVDPKLAWALRHRARFPVDVNRADRETLLRVPGLGTKSVARILETRRFRRLRLEDV
GKLARSMATLRHFIVAEGWRPGASLDSERLKQHLAPKPQQLALL