Protein Info for ABIE41_RS13080 in Bosea sp. OAE506

Annotation: glycogen/starch/alpha-glucan phosphorylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 825 TIGR02093: glycogen/starch/alpha-glucan phosphorylases" amino acids 19 to 815 (797 residues), 1092.2 bits, see alignment E=0 PF00343: Phosphorylase" amino acids 107 to 815 (709 residues), 1007.3 bits, see alignment E=2e-307

Best Hits

Swiss-Prot: 52% identical to PHSG_HAEIN: Glycogen phosphorylase (glgP) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K00688, starch phosphorylase [EC: 2.4.1.1] (inferred from 62% identity to sno:Snov_2560)

Predicted SEED Role

"Glycogen phosphorylase (EC 2.4.1.1)" in subsystem Glycogen metabolism or Maltose and Maltodextrin Utilization (EC 2.4.1.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (825 amino acids)

>ABIE41_RS13080 glycogen/starch/alpha-glucan phosphorylase (Bosea sp. OAE506)
MTETASTATRPADAAGRVEALKAEILRKLTYSLGKNASVAQPHDWLTAGILAARDHVVDV
WHRSTRESYETGRKRVYYLSLEFLIGRSLGDALNNLGLTGPMAQAMRELGVDLSAIESIE
PDAALGNGGLGRLAACYLEAMASTGVPALGYGIRYDHGLFKQRIDGGKQIEVPEDWLSFR
NPWEFERREASYKIGFGGSLTATQKPGEVFWEPEEAVFAVAYDTPVVGWRGRDATTLRLW
RARALHPLSLDAFNQGDIVGAVAERNRAEAISKVLYPNDSTPAGQELRLRQEFFFTSASL
QDLVRRHYRQFGKLDNLADKVAIQLNDTHPSLAVAELMRLLVDEHGLPWEEAWTITNATI
SYTNHTLLPEALETWPVALMERLLPRHMQIIFAINARFLEEVRRSSGGENIDLSTISLID
EHHGRRVRMAHLAFVGSHTVNGVSALHSKLMEQTVFAPLNAIFPGRITNVTNGITPRRWL
FGANPGLTKLLQEVCGEDMTDHIGQIRRLAAHTGDAALHQRLAAIRRENKLKLAKIIRQD
TGVTVDPDAIFDVQIKRIHEYKRQLLNILETIALYDAIRSEPYRDWAPRVKIFAGKAASN
YGTAKAIINLINDVAVVVNNDITTRDRLKVVFLPNYNVSAAELIIPAADVSEQISTAGME
ASGTGNMKFALNGAITIGTLDGANIEIGERVGADNIVIFGMTAEEVEAAKRNPRPTSEVI
AATPHLEGVLDAVASGAYSPRERDRYLGLVEGLRANDWFMVLNDFESYRQAQRRIDSLWA
DQGKWWRMSVTNTAHCGWFSADRAIREYAERIWHVPTSPDVTAGG