Protein Info for ABIE41_RS12775 in Bosea sp. OAE506

Annotation: ion channel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 31 to 55 (25 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 95 to 119 (25 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 202 to 203 (2 residues), see Phobius details amino acids 206 to 224 (19 residues), see Phobius details PF07885: Ion_trans_2" amino acids 156 to 226 (71 residues), 47.2 bits, see alignment E=1.7e-16

Best Hits

KEGG orthology group: None (inferred from 67% identity to mci:Mesci_4166)

Predicted SEED Role

"Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>ABIE41_RS12775 ion channel (Bosea sp. OAE506)
MSGDTTGEAREADISARDRLRQLFHGRSRAALRFQMAAAIIDVVIIAFFIATPLIRDRPA
FLWIDYSIAAILAVEIGARLLAASSALRLLRQPTMLLDLFILATLLVPSAVDNFGFLRIL
RLWSLTQRGWLWERLRATRFGGWEDAGRAVINLATFLFVVTGFIYSFFFADRAGLEGYVD
ALYFTVTTMTTTGFGDITLPGIAGKLTSIVVMIVGISLFVRLAQAIFRPAKVTYPCPRCG
LQRHEPDAVHCKACGQILCIPDPD