Protein Info for ABIE41_RS12295 in Bosea sp. OAE506

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 44 to 65 (22 residues), see Phobius details PF00672: HAMP" amino acids 65 to 112 (48 residues), 23.1 bits, see alignment 1.5e-08 PF18947: HAMP_2" amino acids 261 to 316 (56 residues), 29.6 bits, see alignment 1.1e-10 PF00015: MCPsignal" amino acids 383 to 539 (157 residues), 175 bits, see alignment E=2.6e-55

Best Hits

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (640 amino acids)

>ABIE41_RS12295 methyl-accepting chemotaxis protein (Bosea sp. OAE506)
MGSALGPSTRTGFETPLLVAAAALVAGGAAGGLGYQAALGHLDAVSLLGLGAAGLCAVGA
STWVASRRIQHPLRSLREAVLRAAAGESVTAPHLDRTDAIGDLARGLKTMQDAGDESARL
RAALDGCRTSMMVCDGEGRVVYVNAALLRFFGEAQEDFRIAFPGCSAKDMLGRVMESVQA
RAGVQTASQQPIRFALGRRTVSLALTPVSHADGRRLGTAVEWVETTDELAAAAEVADMVA
AAVEGDFSRRVPVAGKSDALQRIAEGMNQINAVVESAVGEFAAVVGGLAEGDLTRRMRGS
YRGRLDELKSDLNAALAHLEETVATIQGTAGHVARAAAEIDSGAGDLAERTEQTAANLEE
TAATTEQLAASVKHSAGRSRQATDLANEAMGVAQDGKDVVSRAVGAIERIESSSERISEI
VSVIDDIAFQTNLLALNAAVEAARAGDAGRGFAVVASEVRALAQRSGQAAKDIKGLIVSS
NEQVGEGVRFVRSTGEALERIVTATGKVSTTIVEISQAAAEQAHGIEEMNRAVAQMDETT
QQNSALAEQSASSATELMSEIATLRRLVSFFRAESAAAALPVAAAPRTPVEPPRAARPAA
PVRPALKTNETRRQEPATKTWQEPRRRVAGGGRADDWAEF