Protein Info for ABIE41_RS12200 in Bosea sp. OAE506

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 35 to 57 (23 residues), see Phobius details amino acids 100 to 125 (26 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details amino acids 158 to 176 (19 residues), see Phobius details amino acids 221 to 242 (22 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details PF12911: OppC_N" amino acids 22 to 73 (52 residues), 26 bits, see alignment 6.6e-10 PF00528: BPD_transp_1" amino acids 114 to 298 (185 residues), 111 bits, see alignment E=5.8e-36

Best Hits

Swiss-Prot: 43% identical to DDPC_ECOLI: Probable D,D-dipeptide transport system permease protein DdpC (ddpC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 81% identity to xau:Xaut_4658)

MetaCyc: 41% identical to nickel ABC transporter membrane subunit NikC (Escherichia coli K-12 substr. MG1655)
7.2.2.i [EC: 7.2.2.i]; 7.2.2.- [EC: 7.2.2.i]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.2.2.i

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>ABIE41_RS12200 ABC transporter permease (Bosea sp. OAE506)
MTKIDPTAAPALRFEAPPSTSLLAHARHIVSENPVTGLAFGLFALILLAAILGPSLVPYD
PLASNTNSALQAPSARHWFGTDQLGRDIFSRVIVATRLDFAIAVCSVALVFAMGGLAGVM
AGFYGGWVDKVVGRLADTIMAFPLFVLAMGIVAALGNSVTNIVIATAIINFPLYARVARA
EANVRREAGFVQAARLSGNSDWRLLLTQIVPNIMPIMAVQMSLTMGYAILNAAGLSFIGL
GVRPPTPEWGIMVAEGASFIVSGEWWIAFFPGLALMTAVFCFNLLGDGVRDLVDPQRRN