Protein Info for ABIE41_RS12080 in Bosea sp. OAE506

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 PF08659: KR" amino acids 7 to 159 (153 residues), 33.5 bits, see alignment E=6e-12 PF00106: adh_short" amino acids 7 to 192 (186 residues), 114.4 bits, see alignment E=7.1e-37 PF13561: adh_short_C2" amino acids 12 to 250 (239 residues), 179 bits, see alignment E=1.8e-56

Best Hits

KEGG orthology group: None (inferred from 61% identity to bja:blr8120)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (251 amino acids)

>ABIE41_RS12080 SDR family oxidoreductase (Bosea sp. OAE506)
MVSPERVHLVTGAASGIGRATALRLAGPGVGLVLHTGSNEAGLAAVAAAAGEAGAVVVTL
LGDIAEAATAERAVALAAERFGRLDAIAAVAGHARKGAIMDLAEAELRGAVEDSVVALLR
LARLARPLLKASGSGRIVATSSFTAHALRTDMQPFAATAASRAALETTVRLMAHELAPDG
ITVNAVAPGLIRKDEGKGSKLAAEAIARMEAIIPMGRRGLPEEVAAAIAFLASTEASYIT
GQTLHVDGGLV