Protein Info for ABIE41_RS12070 in Bosea sp. OAE506

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 801 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 346 to 366 (21 residues), see Phobius details PF00672: HAMP" amino acids 370 to 414 (45 residues), 21.8 bits, see alignment 2.9e-08 PF18947: HAMP_2" amino acids 476 to 528 (53 residues), 37.1 bits, see alignment 3.8e-13 PF00015: MCPsignal" amino acids 596 to 748 (153 residues), 155.6 bits, see alignment E=1.8e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (801 amino acids)

>ABIE41_RS12070 methyl-accepting chemotaxis protein (Bosea sp. OAE506)
MTKASKPARQRQKARIGIAARIYAALGLMTALTLVASAVAWLSFGRVGTTVQELAGQKMP
LVELALELSQAATQSTALAPRFMDVENVQQRAALTNELDRIEARQFDLIRRIASLSGLDM
KATQQAVDELSRTINEINDLTGARMRNAAAMNGLLDNLGKAGRVFGGVVGSEADEARFNV
TMGIESIKGLSGEQLDAAMKTLNDRDFPVFDFARKLEAQVNELMGMLRETAQIPDKTRLA
IARERFKATAMRIRMELQAAEAASSNPFRGQVVEAVIAMGEGRNGIVEMRERDLTTLGEI
ATTLKTVDSAAVTLRGQVEKLVESARGQAVAASQSSAALIHDSERWLGAIGIGSLLIALS
LSLFYVRPAIIGRLNRLWAATRAIADGALETVVDTKGNDEISDISKSVLLFRDNAVALRE
AEVAKIADQARAQEQRREMMAELGAAFGEVVAAAAAGDFSRRVQANFADAELNALAGSVN
ELLETVQGGLSETCDVLAELSAGHLSTRIEGMYQGAFAELKNGTNALAEEFESTLAKLSE
TVAAVRSATTEILDGVTDLAERTSEESNAVSMATNQLGAFAGTVKKTASEAAQATGMAEG
AESQAQQGEKVVASALEAMQRIRTSSDKISEVIAMIDEIAFQTNLLALNAAVEAARAGDS
GRGFAVVATEVRSLAKRSADASNDVKKLVEAAHGDVKVGVGLVEETAQMFEAIVSSVNDL
TGLMNGISQTAKNQASDVSAINTEIDGIGSMAHQNAALVEETNAALALTDEQTRALSEHI
ARFRFREGHGSDKAHAMAQAA