Protein Info for ABIE41_RS11375 in Bosea sp. OAE506

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 665 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 196 to 214 (19 residues), see Phobius details PF17200: sCache_2" amino acids 42 to 191 (150 residues), 121.9 bits, see alignment E=4.8e-39 PF08269: dCache_2" amino acids 47 to 185 (139 residues), 119.8 bits, see alignment E=2.7e-38 PF00672: HAMP" amino acids 212 to 262 (51 residues), 29.5 bits, see alignment 1.5e-10 PF00015: MCPsignal" amino acids 417 to 570 (154 residues), 165 bits, see alignment E=3.1e-52

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 46% identity to bid:Bind_1798)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (665 amino acids)

>ABIE41_RS11375 methyl-accepting chemotaxis protein (Bosea sp. OAE506)
MSLTKKFATLSISRSFALIAGLAVLMSIGSAGLALYMARDDMMELKRAEVRNAVEAATST
VNSFLARAEKGEISEAEAKKMAVDALAGARFDGGNYYFVIGFNGISVSHANKKIETTDMS
PMKDARGRFFIQDMIKLARDKGAGYIDYDWTKPGDKEASLKISYVMSVPKWQWLIGTGLH
VHDVDGAFVRMIGDVAKVLVPLGLILFGLVVFLSRRANGMLTSLSGTMNALAAGNLQTAI
AHQDRPDEIGTMARALVVFRDAAVAKDAMQADKARVEQEAAAHRDAADGQRRRSEAERAE
ISRTQEGVVAALGTGLEHLAEGDLTYRINENFGSDYAKLRDDFNAAIGKLQETMRQIATN
TESMKAGSIEISQAADDLAGRTEQQAASVEETATALDELTATVRQTAESARQANQATTQV
KAEAEQSTAIVRDAVVAMGGIEKSAEEISQIVGVIDEIAFQTNLLALNASVEAARAGDAG
KGFAVVASEVRALAQRSAEAAKEIKELIAASNSEVEKGVALVGQTGSALQRMAQEITRAT
GLVSEIASAAQEQASGLQEVNTAVGEMDQSTQQNAAMAEQSTAAAHSLSQEADRLAALVA
RFQLGGDVAGLKAMARTMQAAAAPAPRKTAPPATRPVARPVAAAGGGGAARKPEMSAHDK
GWAEF