Protein Info for ABIE41_RS11135 in Bosea sp. OAE506

Annotation: DUF4159 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 943 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 60 to 82 (23 residues), see Phobius details amino acids 623 to 642 (20 residues), see Phobius details amino acids 654 to 671 (18 residues), see Phobius details TIGR02226: N-terminal double-transmembrane domain" amino acids 6 to 84 (79 residues), 54.2 bits, see alignment E=6.8e-19 PF07584: BatA" amino acids 6 to 80 (75 residues), 63 bits, see alignment E=2.8e-21 PF13709: DUF4159" amino acids 707 to 923 (217 residues), 165.5 bits, see alignment E=1.1e-52

Best Hits

Predicted SEED Role

"FIG003603: membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (943 amino acids)

>ABIE41_RS11135 DUF4159 domain-containing protein (Bosea sp. OAE506)
MNALPLAFSAPLALAALALLPALWLILRVTPPRPRRIDFPPLKIMADLVAKREMPAHTPW
WLLALRMLVAALAILAVAGPVWNPPRDAAPLRGPMLLMIDNGFGAAVDWPERLLVAESRV
AAAAREGRPVALLGLAENPAEITLSEPRAALDRLRAFALQPHAPDRGAHLPRIEAFLRTA
PDAEIVWVTDGLSITDDGAFLARLRQEAGSGRVSIHAGPIDQLALTAPENLAGALAVKVL
RPTTSAAASGLVRALDLKGLPLGDAPFIFNGSDLQTTARLTLPIEVRNAVSRLEIVGERS
AGAVALLDDRSKRRRVGIVSGATTDTAQPLLSPTYYVSRALQPFAEIREPRPGSTDPVGE
LLAQNLSVLVLADIGALDPDTAGKINAFIQRGGVLLRFAGARLAAASDELTPVRLRRGGR
TLGGGLSWETPRKLAAFTRESPFFGVPVNDDVRVSRQILAEPEADLSRKTWAALEDGTPV
VTGERRGDGMIAMMHVTADTTWSNLPLSGLFVEMLRKIVGLAGTGPAEPQGEDARVETLS
PTRVLDGTGSFRSPPATAQPVARSFTGRATLAHPPGIYGPADGSLAVNALNPADTLRAID
LAALGAPILPVDKPVALDIRPQLLVLALLLLVADTLATLWLGGRLNFARRARRAAPAAIL
MALALGGGSLLPDEARAQAPASPAATPVPDQRPPIPRELFAAGAVTRLAYVVTGDRAVDE
MSKAGLAGLNVVLGARTALEPGEAVGVNADRDELAFFPVLYWPIVSGRPIPSSETLRKLE
AYMKGGGLVIFDTRDAMSARPGGGTTPEGDQLRRMLQTLDIPELEPLPRDHVLTKTFYIL
DGFVGRYDSGTTWVEILPPAGADGRRPARAGDNVSPIVITSNDLASAWAVNRRGEPMVPL
SGSDPRQREMALRAGVNLVMYALTGNYKADQVHVPALLERLGQ