Protein Info for ABIE41_RS09380 in Bosea sp. OAE506

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF08238: Sel1" amino acids 58 to 92 (35 residues), 32.4 bits, see alignment 5.1e-12 amino acids 95 to 128 (34 residues), 13.6 bits, see alignment 4.4e-06 amino acids 164 to 199 (36 residues), 22.9 bits, see alignment 4.9e-09 amino acids 202 to 235 (34 residues), 19.8 bits, see alignment 4.8e-08 amino acids 236 to 270 (35 residues), 19.7 bits, see alignment 5.1e-08

Best Hits

KEGG orthology group: K07126, (no description) (inferred from 49% identity to mch:Mchl_2648)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>ABIE41_RS09380 tetratricopeptide repeat protein (Bosea sp. OAE506)
MTGLRRALAGLWLAGLFFASPAAAAERDLAYGAYQTGHYRRALSEALKRIEANGRDATAM
TLIGEIYRQGLGVRPDQKVATEWYERAAERGDINAVYALAIALLDDAAGRRDPARAGALL
KRAAEAGHPAANYNLALALLATGQPAEETQAVRSLEIAAKGGIPDALHALATLARQGRGM
PKSDEQAARWMAQAAQAGHLPAEIEYAIMLFNGTGVAADETAAARLFLRAAGKGNPIAQN
RIARLYQSGRGIPPDSIEAAAWHLAARARGLDDPALGQLFDRLTHEQQARAARLAADRIE
GAALTSP